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Packages that use Sample | |
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net.talvi.puffinplot | |
net.talvi.puffinplot.data | |
net.talvi.puffinplot.plots | |
net.talvi.puffinplot.window |
Uses of Sample in net.talvi.puffinplot |
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Methods in net.talvi.puffinplot that return Sample | |
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Sample |
PuffinApp.getSample()
Gets the current Sample |
Methods in net.talvi.puffinplot that return types with arguments of type Sample | |
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java.util.List<Sample> |
PuffinApp.getAllSamplesInSelectedSites()
Gets all the samples in all the sites having at least one selected sample. |
java.util.List<Sample> |
PuffinApp.getSelectedSamples()
Gets all the currently selected samples. |
Uses of Sample in net.talvi.puffinplot.data |
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Methods in net.talvi.puffinplot.data that return Sample | |
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Sample |
Suite.getCurrentSample()
Returns the current sample |
Sample |
Datum.getSample()
Returns the sample of which this measurement was made. |
Sample |
Suite.getSampleByIndex(int i)
Returns the sample with the specified index. |
Sample |
Suite.getSampleByName(java.lang.String name)
Returns a sample from this suite with the specified name, or null if no such sample exists. |
Methods in net.talvi.puffinplot.data that return types with arguments of type Sample | |
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java.util.List<Sample> |
Site.getSamples()
Returns the samples in this site |
java.util.List<Sample> |
Suite.getSamples()
Returns all the samples in this suite. |
Methods in net.talvi.puffinplot.data with parameters of type Sample | |
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static PcaAnnotated |
PcaAnnotated.calculate(Sample sample,
Correction correction)
Performs principal component analysis (PCA) on the specified sample. |
int |
Suite.getIndexBySample(Sample sample)
Returns the index of a specified sample within this suite. |
void |
Datum.setSample(Sample v)
Sets the sampe on which this measurement was made. |
java.lang.String |
Suite.SiteNamer.siteName(Sample sample)
Determines a site name from a sample name. |
Method parameters in net.talvi.puffinplot.data with type arguments of type Sample | |
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void |
Suite.calculateAmsStatistics(java.util.List<Sample> samples,
Suite.AmsCalcType calcType,
java.lang.String scriptPath)
Calculates and stores AMS statistics using an external script. |
void |
Suite.setNamedSiteForSamples(java.util.Collection<Sample> samples,
java.lang.String siteName)
Explicitly sets a site for the specified samples. |
void |
Suite.setSiteNamesByDepth(java.util.Collection<Sample> samples,
double thickness)
Sets site names for a continuous suite according to the depth of the samples. |
void |
Suite.setSiteNamesBySubstring(java.util.Collection<Sample> samples,
java.util.BitSet charMask)
Sets site names for samples according to chosen characters from the sample names. |
void |
Suite.setSitesForSamples(java.util.Collection<Sample> samples,
Suite.SiteNamer siteNamer)
Sets sites for supplied samples according to a supplied site namer. |
Constructor parameters in net.talvi.puffinplot.data with type arguments of type Sample | |
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Site(java.lang.String name,
java.util.List<Sample> samples)
Creates a site containing the specified samples. |
Uses of Sample in net.talvi.puffinplot.plots |
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Methods in net.talvi.puffinplot.plots with parameters of type Sample | |
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void |
SampleClickListener.sampleClicked(Sample sample)
Invoked when a sample is clicked in a plot. |
Uses of Sample in net.talvi.puffinplot.window |
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Methods in net.talvi.puffinplot.window that return Sample | |
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Sample |
PlotParams.getSample()
Returns the sample to plot. |
Methods in net.talvi.puffinplot.window that return types with arguments of type Sample | |
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java.util.List<Sample> |
SampleChooser.getSelectedSamples()
Returns all the currently selected samples. |
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