DynProgr_scalar.c File Reference

Scalar alignment routine. More...

#include <sys/types.h>
#include "swps3.h"
#include "debug.h"
#include "matrix.h"

Include dependency graph for DynProgr_scalar.c:

Go to the source code of this file.

Defines
#define	INFINITY   (1.0/0.0)
Functions
EXPORT double	swps3_alignScalar (const DMatrix matrix, const char *s1, int ls1, const char *s2, int ls2, Options *options)

---

Detailed Description

Scalar alignment routine.

Definition in file DynProgr_scalar.c.

---

Define Documentation

#define INFINITY   (1.0/0.0)

Definition at line 35 of file DynProgr_scalar.c.

Referenced by swps3_alignScalar().

---

Function Documentation

EXPORT double swps3_alignScalar	(	const DMatrix	matrix,
		const char *	s1,
		int	ls1,
		const char *	s2,
		int	ls2,
		Options *	options
	)

Definition at line 36 of file DynProgr_scalar.c.

References Options::gapExt, Options::gapOpen, INFINITY, MATRIX_DIM, MAX_SEQ_LENGTH, and Options::threshold.

Referenced by main().

---